IIEST Shibpur has begun offering an integrated M.Tech for every engineering stream. So, first, it is best to decide whether or not you want to pursue your course at an institute that doesn’t have a long-standing record of producing postgraduates unlike IITs or other reputed engineering institutes.
It does not really make a difference which institute you are opting for, JU or IIEST. If you are dedicated, you can secure good opportunities from both of these two institutes.