Which one is better for CSE, MITS Gwalior or LNCT Bhopal?

All of the colleges that you have mentioned are great institutes. But it would be suggested that you opt for LNCT Bhopal. 

It offers more opportunities to the students and initiates programs to help students enhance their skills. The faculty here is well-experienced and very cooperative. Although there is a pressure of maintaining 75% attendance, it all works out for the benefit of the students. 

If you do not have a better option other than LNCT Bhopal, then you should opt for it.