Which institute should I take for the CS branch, Jaypee, Noida, or NIT Goa?

It depends upon what you think you will pursue as a career. Generally, there are transparent ways into monitoring whether or not an institute is really worthy, at least when considering the CSE department. 

• If you are more inclined towards pursuing a career as a computer programmer, then here are some websites you should definitely check out: CodeChef, HackerRank and CodeForces.
• These competitions apparently gauge the programming skills a person generally comes with, and whether or not they will be successful in relevant aspects. 
• These websites come with a neat leaderboard, including the ranks of coders assessed accordingly in terms of their programming skills. 
• The major upside of these sites is that the leaderboard arrives with the name of the institute these coders belong from. 
• This naturally helps to evaluate how reasonable an institute is. 
• You can moreover filter the leaderboards in accordance to the institute you prefer. 

Therefore, these features go on to provide more compact comparisons among institutes and can possibly help you decide which institute is worthy. However, it is best to also research more about the prospects each institute shares; and how they are in terms of placement, faculty, etc.